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Bugzilla
[198 users on Ohloh]
Bugzilla is a web-based bug tracking tool. It works with an existing web server, e.g. Apache, and with an existing SQL database, e.g. MySQL or PostgreSQL.
MantisBT
[151 users on Ohloh]
Mantis is an easily deployable, web based bugtracker to aid product bug tracking. It requires PHP, MySQL and a web server. It is simpler than Bugzilla and easily editable. Check out the online Demo.
Request Tracker
[66 users on Ohloh]
RT is an enterprise-grade ticketing system which enables a group of people to intelligently and efficiently manage tasks, issues, and requests submitted by a community of users.

The RT platform has been under development since 1996, and is used by systems administrators, customer support staffs, IT managers, developers and marketing departments at thousands of sites around the world.

Written in object-oriented Perl, RT is a high-level, portable, platform independent system that eases...

Open Project Manager
[2 users on Ohloh]
Project Manager and Bug Tracker for Agile Software Development. Flexible Task Workflows and Views. Supports Velocity and Iterations planning. Web-based, Easy to install and user friendly. Supports unicode.
Try it online at http://openprojectmanager.com